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  • Protein Modeling
  • Multiscale Dynamics
  • Hybrid Methods For EM
ilMode

ilMode

Constrained NMA for loop modeling

KORPM

KORPM

Stability prediction upon mutation

KORP

KORP

Orientational coarse-grained potential for protein & loop modeling

RCD+

RCD+

Efficient loop closure engine for protein loop prediction (rcd.chaconlab.org) 

iMODFIT

iMODFIT

Flexible fitting of atomic structures into EM maps

KORP-PL

KORP-PL

Effective coarse-grained knowledge-based scoring function for protein-ligand interactions

FRODOCK

FRODOCK

Structural prediction of protein-protein interactions

iMOD

iMOD

Normal Mode Analysis in internal coordinates

Dalai-GA SAXS

Dalai-GA SAXS

Ab initio 3D modeling of solution scattering profiles

Situs

Situs

Package for the modeling and refinement of multi-scale biomolecular EM structures (external Wriggers' lab)

ADP_EM

ADP_EM

Ultra-fast multiresolution rigid-body fitting tool using spherical harmonics

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