Constrained NMA for loop modeling
Stability prediction upon mutation
Orientational coarse-grained potential for protein & loop modeling
Efficient loop closure engine for protein loop prediction (rcd.chaconlab.org)
Flexible fitting of atomic structures into EM maps
Effective coarse-grained knowledge-based scoring function for protein-ligand interactions
Structural prediction of protein-protein interactions
Normal Mode Analysis in internal coordinates
Ab initio 3D modeling of solution scattering profiles
Package for the modeling and refinement of multi-scale biomolecular EM structures (external Wriggers' lab)
Ultra-fast multiresolution rigid-body fitting tool using spherical harmonics