Bioinformatics Toolchest.

Enhancing the inverse folding approach PiFold

Constrained NMA for loop modeling

Efficient loop closure engine for protein loop prediction (rcd.chaconlab.org)

Orientational coarse-grained potential for protein & loop modeling

Stability prediction upon mutation

Effective coarse-grained knowledge-based scoring function for protein-ligand interactions

Normal Mode Analysis in internal coordinates

Flexible fitting of atomic structures into EM maps

Ultra-fast multiresolution rigid-body fitting tool using spherical harmonics

Structural prediction of protein-protein interactions

Ab initio 3D modeling of Small-angle X-ray scattering (SAXS) profiles. A relic from early 90s

Package for the modeling and refinement of multi-scale biomolecular EM structures (external Wriggers' lab)