3DRobot benchmark

  • Last update: 28 November 2018
  • File size: 656.55 MB
  • Version: 1
  • Downloaded: 31
  • Author: López-Blanco J.R. and Chacón P.
5.0/5 rating 1 vote
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#  --- KORP v1.22 release - November 26th, 2018 ---  #
#  --- http://chaconlab.org/modeling/korp       ---  #
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> 3DRobot modeling benchmark
----------------------------

The original 3DRobot and the 3DRobot versions of the classic
benchmarks were downloaded from:
https://zhanglab.ccmb.med.umich.edu/3DRobot/decoys/

Benchmark     Targets  Structures
id              [#]        [#]
---------------------------------
3DRobot         200       60200
rosetta3DR41     41        4141
itasser3DR56     56       22456

A plain-text table ("TMall" file, e.g. 3DR200_TMall.txt) with
the C-alpha RMSDs, scores (TM, MS and GDT_TS), and the energies
computed using others potentials (ICOSA, RW+, GOAP, ORDER_AVE, VoroQ,
DOSP, and CSF) can be found inside each benchmark sub-directory.

Text files with paper's results are also provided. For example,
the "score" file (korp3A90c16f10_itasser56no50_6Dr10n36c8b4yz8bf18_score.txt)
contains all the KORP energies obtained with korpe program. The "stat" file
(korp3A90c16f10_itasser56no50_6Dr10n36c8b4yz8bf18_stat.txt) contains
statistics computed from "score" file data using in-house software.


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CONTACT
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Please, feel free to contact with us!
(suggestions or bug reports are welcome)

Jose Ramon Lopez-Blanco (PhD.)
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Pablo Chacon (PhD.)
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