3DRobot benchmark

  • Last update: 28 November 2018
  • File size: 656.55 MB
  • Version: 1
  • Downloaded: 8
  • Author: López-Blanco J.R. and Chacón P.
5.0/5 rating 1 vote
######################################################
#  --- KORP v1.22 release - November 26th, 2018 ---  #
#  --- http://chaconlab.org/modeling/korp       ---  #
######################################################


> 3DRobot modeling benchmark
----------------------------

The original 3DRobot and the 3DRobot versions of the classic
benchmarks were downloaded from:
https://zhanglab.ccmb.med.umich.edu/3DRobot/decoys/

Benchmark     Targets  Structures
id              [#]        [#]
---------------------------------
3DRobot         200       60200
rosetta3DR41     41        4141
itasser3DR56     56       22456

A plain-text table ("TMall" file, e.g. 3DR200_TMall.txt) with
the C-alpha RMSDs, scores (TM, MS and GDT_TS), and the energies
computed using others potentials (ICOSA, RW+, GOAP, ORDER_AVE, VoroQ,
DOSP, and CSF) can be found inside each benchmark sub-directory.

Text files with paper's results are also provided. For example,
the "score" file (korp3A90c16f10_itasser56no50_6Dr10n36c8b4yz8bf18_score.txt)
contains all the KORP energies obtained with korpe program. The "stat" file
(korp3A90c16f10_itasser56no50_6Dr10n36c8b4yz8bf18_stat.txt) contains
statistics computed from "score" file data using in-house software.


-------
CONTACT
-------

Please, feel free to contact with us!
(suggestions or bug reports are welcome)

Jose Ramon Lopez-Blanco (PhD.)
This email address is being protected from spambots. You need JavaScript enabled to view it.

Pablo Chacon (PhD.)
This email address is being protected from spambots. You need JavaScript enabled to view it.